Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs56036951 chr13:46937797 G/A 4.73E-7 289 24.73 34.38 23.23 KM Plot
KIRP rs56053252 chr13:47032316 T/C 1.9E-5 285 25.23 30.2 25.1 KM Plot
KIRP rs56057655 chr2:108615317 CTTTA/C 0.000102 279 23.4 38.03 11.43 KM Plot
KIRP rs56057902 chr1:231147554 T/C 5.18E-5 278 25.02 29.5 10.97 KM Plot
KIRP rs56061532 chr19:16549890 T/G 9.78E-9 289 26 21.97 11.37 KM Plot
KIRP rs56075693 chr6:28290328 T/G 1.38E-8 289 25.6 26.4 9.77 KM Plot
KIRP rs56112656 chr10:94678966 A/G 7.47E-6 288 26.2 25.4 10.97 KM Plot
KIRP rs56144764 chr7:20675016 T/G 2.29E-5 288 25.82 22.57 11.2 KM Plot
KIRP rs56189111 chr6:28271973 C/A 1.38E-8 289 25.6 26.4 9.77 KM Plot
KIRP rs56204621 chr6:71829576 A/T 0.000115 281 25.6 28.1 10.83 KM Plot
KIRP rs56219901 chr17:73463595 C/A 0.000199 284 25.6 24.3 31.83 KM Plot
KIRP rs56225483 chr17:80712716 C/T 5.22E-9 285 25.93 26 16.4 KM Plot
KIRP rs56241616 chr19:19506092 C/T 5.0E-5 289 25.02 26.77 8.98 KM Plot
KIRP rs56255938 chr17:73467368 A/G 0.000148 283 25.93 23.77 31.83 KM Plot
KIRP rs56259547 chr17:80683519 G/A 2.61E-10 277 25.67 28.35 16.4 KM Plot